A comprehensive platform for analyzing microbiome data from the LucKi cohort, featuring machine learning models for age group prediction from gut microbiome taxonomic profiles. The platform includes both interactive Streamlit web application and Jupyter notebook-based analysis.
A simple R package to convert MetaPhlAn 4 output profiles to a phyloseq object.
Integrated 16S + shotgun metagenomics workflow for kvass fermentation (QIIME2, MetaPhlAn4, Kraken2, HUMAnN3, DRAM2) with reproducible outputs.
Metagenomic functional profiling pipeline for reconstructing metabolic pathway abundances and gene families from shotgun sequencing reads. Automates marker-based taxonomic profiling and translated search to quantify community-wide metabolic potential and taxonomically attribute metabolic functions.
A downstream companion for MetaPhlAn (nf-core/taxprofiler), enabling HUMAnN functional and RGI/CARD AMR profiling from shotgun metagenomes.
Add a description, image, and links to the metaphlan4 topic page so that developers can more easily learn about it.
To associate your repository with the metaphlan4 topic, visit your repo's landing page and select "manage topics."