Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.
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Jun 6, 2023 - HTML
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paired-end-sequencing
Here are 11 public repositories matching this topic...
Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA
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Jun 6, 2024 - C++
Bacterial Assembly, Screening & Improvement Loop
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Sep 8, 2026 - Python
Pipeline detecting pathogen DNA in sequencing data, specifically designed to differentiate between host (mouse) and pathogen genomes.
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Jul 31, 2026 - HTML
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Jan 13, 2022 - C
De novo genome assembly using SPAdes in Ubunto WSL
bioinformatics spades genome-assembly paired-end-sequencing wsl-ubuntu bacterial-genomes de-novo-design
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Jun 17, 2026 - Shell
MEGAHIT-based de novo assembly of paired-end sequencing data with assembly statistics and contig generation.
bioinformatics metagenomics genome-assembly de-novo-assembly paired-end-sequencing wsl-ubuntu megahit
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Jun 19, 2026
Deterministic Rust de Bruijn assembler for streamed gzip FASTA/FASTQ, with quality filtering and paired-end/multi-lane support.
rust bioinformatics fastq genome-assembly viral-genomics paired-end-sequencing sequence-assembly de-bruijn-graph
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Sep 6, 2026 - Rust
NGS quality control and preprocessing using fastp and FastQC in Ubuntu WSL
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Jun 16, 2026 - HTML
This script takes advantage of read pairing in bam/cram files to identify the presence of STR extensions.
str paired-end ngs-analysis paired-end-sequencing wgs-analysis simple-tandem-repeats fxn frataxin str-extension paired-end-reads
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Dec 8, 2021 - Shell
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