Hybridization detection using phylogenetic invariants

𝙋𝙝𝙮𝙡𝙤𝙜𝙚𝙣𝙚𝙩𝙞𝙘 𝘾𝙤𝙢𝙥𝙤𝙣𝙚𝙣𝙩 𝙂𝙧𝙖𝙥𝙝 ⸺ Haskell program and libraries for general phylogenetic graph search

Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)

phylogenetic networks using ggplot2 and ggtree

Alignment-free phylogenomic splits

PhyloZoo: a Python package for working with phylogenetic networks and related evolutionary datatypes

Discordant attachment frequency tool

Framework for construction of phylogenetic networks on High Performance Computing (HPC) environment

Squirrel: a Python package for reconstructing level-1 phylogenetic networks from sequence alignments or four-leaved networks

Code for the study: Integrating lineage-specific and universal genomic probes illuminates phylogenetic relationships and molecular evolution in Sauvagesieae (Ochnaceae)

PaNDA: a Python package for computing and maximizing phylogenetic diversity in phylogenetic networks