Computational pipeline for multiplexed analysis of tumors.
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Sep 12, 2021 - Jupyter Notebook
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protein-expression
Here are 15 public repositories matching this topic...
Differential Dependency Network
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Aug 27, 2024 - Python
ExprCompareR is a R package that integrates RNA-seq and protein-expression data across human tissues to enable statistical comparison and visualization of transcript-protein relationships.
r shiny proteomics r-package shiny-apps transcriptomics multi-omics bioinformatics-tool protein-expression gene-expression-analysis
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Nov 29, 2025 - R
An open source predictive model of protein expression in yeast, written in Python.
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Oct 14, 2019 - Jupyter Notebook
☕ CAAPHA — Cancer Abundance-Aware Proteomic Heatmap Atlas
bioinformatics heatmap computational-biology data-visualization proteomics cancer-research quantitative-proteomics dcaf protein-expression ubiquitin e3-ligase ligase molecular-glue crl4 ddb1 cul4
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Jul 2, 2026 - R
Deep learning approach for multiclass classification of mice based on cortical protein expression and experimental conditions in Python.
python data-science bioinformatics deep-learning reproducible-research tensorflow jupyter-notebook computational-biology neuroscience neural-networks supervised-learning proteomics biological-data-analysis multiclass-classification protein-expression
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Oct 3, 2025 - HTML
UC Berkeley MSSE Capstone Project: Evaluating & refining filtering strategies for de novo protein binders
protein-structure filtering protein-design protein-protein-interaction protein-folding protein-binding denovo-design protein-expression binding-prediction rfdiffusion boltz2
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May 13, 2026 - Jupyter Notebook
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Apr 29, 2026 - R
Numerically solving the dynamical equations of a protein expression system
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Aug 25, 2021 - Jupyter Notebook
Prediction of surface protein expression from mRNA expression using a regression auto-encoder neural network.
torch pytorch autoencoder protein-rna-interactions mrna fine-tuning single-cell-analysis cite-seq autoencoder-neural-network protein-expression regression-model
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Mar 3, 2024 - Python
Esophageal Cancer Protein Expression Explorer
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Sep 6, 2024 - Python
Local web app for ensemble dry-lab predictions (protein expression, strain titer, bioproduction curves).
bioinformatics ml prediction protein-sequences strain-engineering strain-analysis mlops protein-expression dry-lab bioproduction
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Jun 8, 2026 - Python
Unsupervised learning analysis of mice brain protein expression using PCA, SVD, UMAP and clustering algorithms (K-Means, DBSCAN, Agglomerative) with Silhouette-based model evaluation.
python data-science machine-learning bioinformatics clustering scikit-learn jupyter-notebook pca dimensionality-reduction kmeans unsupervised-learning svd tsne dbscan umap agglomerative-clustering protein-expression silhouette-score
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Feb 20, 2026 - Jupyter Notebook
POP2 protein expression research companion app and project artifact — CURC Highest Honors.
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Mar 27, 2025 - TypeScript
All the R scripts I used during my time as a grad student at Clemson University
rna-seq pearson-correlation protein-expression leafcutter mirna-seq stability-predictions western-blot
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Nov 8, 2023 - R
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