A comprehensive collection of long inverted repeats in 424 eukaryotic genomes
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Nov 4, 2021 - R
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sirna
Here are 14 public repositories matching this topic...
python script that picks suitable targets for siRNA with off-target optimization
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Oct 23, 2021 - Python
Off-target analysis of siRNA knock down paired with RNAseq
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Jul 18, 2025 - R
This is the official codebase for RESM: Capturing sequence and structure encoding of RNAs by mapped transfer learning from ESM (evolutionary scale modeling) protein language model
rna-structure rna transfer-learning language-model zero-shot sirna foundation-models rna-rna-interactions
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Aug 11, 2025 - Python
Fast and simple small RNA read alignment and visualisation
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Aug 9, 2018 - Go
Reusable software components for supervised learning applied to siRNA.
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Feb 22, 2021 - Python
RSC(Reusable Software Components) for supervised learning applied to siRNA with test cases.
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Jul 22, 2020 - Python
Modernized siRNA selection web platform – refactored for Ubuntu/nginx, reCAPTCHA-secured login, modular Perl CGI + PHP stack
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Nov 1, 2025 - Perl
OmniScreen-AI: Multi-modal AI drug screening for PD-L1 — small molecules, peptides & nucleic acids. RDKit · AutoDock Vina · ESM-2 · AlphaFold3 · OpenMM · MM-PBSA. Notebook-driven Colab→GPU pipeline.
machine-learning bioinformatics deep-learning cheminformatics structural-biology protein-ligand-docking jupyter-notebook computational-biology openmm artificial-intelligence drug-discovery rdkit sirna google-colab molecular-docking pd-l1 cancer-immunotherapy computer-aided-drug-design alphafold antibody-engineering
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Jul 22, 2026 - Jupyter Notebook
Empirico is a biotechnology company that powers therapeutic discovery with human genetics and small interfering RNA (siRNA) medicines. Combining internal capabilities in human genetics and siRNA chemistry with partner expertise, the company identifies naturally occurring genetic variations associated with health benefits and develops precision…
company drug-discovery life-sciences biotechnology sirna pharmaceuticals human-genetics apis-json therapeutics
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Aug 4, 2026
Soufflé Therapeutics is a genetic medicine company developing nucleic acid (siRNA) therapeutics that use proprietary cell-specific ligand-conjugation technology to target and deliver treatments to specific cell types.
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Aug 4, 2026
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