snparcher

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erikenbody / snparcher_popgen

Snakemake workflow for population structure and genetic diversity from a filtered SNP VCF: ancestry inference, population assignment, ROH/F_ROH, pi, and callable-site-aware statistics from GVCFs. Downstream companion to snpArcher.

bioinformatics snakemake population-genomics admixture conservation-genetics runs-of-homozygosity snparcher

Updated Jul 31, 2026
Python

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