PRVdetection

A tool to find specific nucletide site between two subtype of viruses

requirements

You will need "git","make","cmake" and "gcc" to build this program

For Ubuntu: You can build them in following

sudo apt update
sudo apt install make gcc cmake git
git clone https://github.com/yuumeHuang/PRVdetection.git
cd PRVdetection
mkdir build
cd build
cmake ..
make

usage

Tset data were in PRVdetection/test_data copy build/PRVdec and test data into workdir Run PRVdec:

./PRVdec msafile type1list type2list type1seqnumber type2seqnumber genomelength

for test data:

./PRVdec 1.fa type1 type2 17 48 199813