[ARI:0001131, ARI:0001144, ARI:0001157, ARI:0001158, ARI:0001159, ARI:0001160] - mappings review - #83
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…:0001160] - mappings review
The `validate` job rejected this review batch with 19 errors, from two pre-existing gaps the batch was the first to expose. Morvan syndrome was created on 2026-07-02, before the metadata manager allocated sequential ids, so it kept a placeholder `#ARI_new_5199ce2a` IRI with no `ARI_ID` — the last such record in the ontology. Nothing noticed until this batch exported mapping rows for it and the empty subject reached both files spelled differently, `ARI:` on one side and empty on the other, so each file reported the other as missing the row. It gets `ARI:0001213` and the registry namespace every other disease uses. `ARI:0001158` lost DOID 0060234, umls C1275078, ncit C98873 and mesh C563187 through the disease record's field editor, which writes the ontology and nothing else — its changelog shows the four `Edited:` lines half an hour before the review was submitted. So four curated ids went without a judgment behind them, which is what `xref-deleted` is for. The replacements are right, so the four are flagged wrong in both exports rather than restored. The `mesh` NoTermFound row the review did write does not cover this: an absent-database verdict says nothing about the id that was previously stored. Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
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Curator comment:
Submitted via the ARI Metadata Manager by @KrishnaTO.
Reviewed mappings
35 confirmed, 3 flagged, 15 no term in database — 53 new row(s) added to
mappings/ari.sssom.tsv(SSSOM) andmappings/ari.equivalencies.tsv. 19 confirmed id(s) also stored on the disease record itself. 1 flagged id(s) removed from the disease record itself.Changes
Mooren's ulcer (ARI:0001131)
Morvan syndrome (http://www.aurint.org/ontologies/ari-disease#ARI_new_5199ce2a)
Neuromyotonia (ARI:0001144)
Polyglandular autoimmune syndrome type 1 (ARI:0001157)
Polyglandular autoimmune syndrome type 2 (ARI:0001158)
Polyglandular autoimmune syndrome type 3 (ARI:0001159)
Polyglandular autoimmune syndrome type 4 (ARI:0001160)