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[ARI:0001131, ARI:0001144, ARI:0001157, ARI:0001158, ARI:0001159, ARI:0001160] - mappings review #83

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KrishnaTO merged 2 commits into from
Sep 7, 2026
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[ARI:0001131, ARI:0001144, ARI:0001157, ARI:0001158, ARI:0001159, ARI:0001160] - mappings review #83

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[ARI:0001131, ARI:0001144, ARI:0001157, ARI:0001158, ARI:0001159, ARI…
KrishnaTO Sep 7, 2026
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Give Morvan syndrome an id and record the ids ARI:0001158 lost
KrishnaTO Sep 7, 2026
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24 changes: 24 additions & 0 deletions changelog.md
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# Changelog

## edit/KrishnaTO/mappings-review-1788817126

Fixes the 19 `validate` errors the review batch raised. Both were pre-existing gaps this
batch was the first to expose; neither is a fault in the judgments the curator recorded.

- **Morvan syndrome had no ARI id.** It was created on 2026-07-02, before the metadata
manager started allocating sequential ids, so it kept a placeholder
`#ARI_new_5199ce2a` IRI and carried no `ARI_ID` at all — the only such record left in the
ontology. It went unnoticed until this batch exported the first mapping rows for it, and
the empty subject reached both files spelled differently (`ARI:` in the equivalencies,
empty in the SSSOM), so each file also reported the other as missing the row. Assigned
`ARI:0001213` and moved the individual onto the registry namespace, matching every other
disease. The number is the ontology's highest plus one, which is the same floor the
manager's own allocator uses.
- **Recorded four judgments that were never written.** `ARI:0001158` (Polyglandular
autoimmune syndrome type 2) lost DOID `0060234`, umls `C1275078`, ncit `C98873` and mesh
`C563187`. Its changelog shows all four went through the disease record's field editor
(`Edited: doid`, `Edited: nci`, `Edited: umls`, `Edited: mesh`) half an hour before the
review was submitted. That path writes the ontology and nothing else, so the ids were
dropped with no decision behind them — exactly what `xref-deleted` exists to catch. The
replacements are right, so the four are now flagged wrong in both exports rather than
restored. Note that the `mesh` `NoTermFound` row the review did write does not stand in
for this: an absent-database verdict says nothing about the specific id that was there.

## fix-ms-omop-and-lost-judgments

- **Corrects an error `restore-overwritten-curation` introduced.** OMOP `4027727` is
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57 changes: 57 additions & 0 deletions mappings/ari.equivalencies.tsv
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Expand Up @@ -562,3 +562,60 @@ ARI 0001074 Cryptogenic organizing pneumonia skos:exactMatch ncit C35806 manual-
ARI 0001074 Cryptogenic organizing pneumonia skos:exactMatch icd10cm J84.114 manual-negative github:KrishnaTO
ARI 0001074 Cryptogenic organizing pneumonia skos:exactMatch umls C0085786 manual-negative github:KrishnaTO
ARI 0001074 Cryptogenic organizing pneumonia skos:exactMatch mesh D000080203 manual-negative github:KrishnaTO
ARI 0001131 Mooren's ulcer skos:exactMatch ORPHA 519408 manual github:KrishnaTO
ARI 0001131 Mooren's ulcer skos:exactMatch MONDO 0001032 manual github:KrishnaTO
ARI 0001131 Mooren's ulcer skos:exactMatch DOID 10439 manual github:KrishnaTO
ARI 0001131 Mooren's ulcer skos:exactMatch SNOMEDCT 22440001 manual github:KrishnaTO
ARI 0001131 Mooren's ulcer skos:exactMatch icd10cm H16.05 manual github:KrishnaTO
ARI 0001131 Mooren's ulcer skos:exactMatch umls C0155072 manual github:KrishnaTO
ARI 0001131 Mooren's ulcer skos:exactMatch omop 435271 manual github:KrishnaTO
ARI 0001144 Neuromyotonia skos:exactMatch SNOMEDCT 305719002 manual github:KrishnaTO
ARI 0001144 Neuromyotonia skos:exactMatch MONDO 0019399 manual github:KrishnaTO
ARI 0001144 Neuromyotonia skos:exactMatch ncit C202012 manual github:KrishnaTO
ARI 0001144 Neuromyotonia skos:exactMatch mesh D020386 manual github:KrishnaTO
ARI 0001144 Neuromyotonia skos:exactMatch umls C0242287 manual github:KrishnaTO
ARI 0001144 Neuromyotonia skos:exactMatch ORPHA 84142 manual github:KrishnaTO
ARI 0001144 Neuromyotonia skos:exactMatch omop 4125693 manual github:KrishnaTO
ARI 0001157 Polyglandular autoimmune syndrome type 1 skos:exactMatch SNOMEDCT 11244009 manual github:KrishnaTO
ARI 0001157 Polyglandular autoimmune syndrome type 1 skos:exactMatch omop 4008545 manual github:KrishnaTO
ARI 0001157 Polyglandular autoimmune syndrome type 1 skos:exactMatch DOID 0050167 manual github:KrishnaTO
ARI 0001157 Polyglandular autoimmune syndrome type 1 skos:exactMatch MONDO 0009411 manual github:KrishnaTO
ARI 0001157 Polyglandular autoimmune syndrome type 1 skos:exactMatch ncit C129727 manual github:KrishnaTO
ARI 0001157 Polyglandular autoimmune syndrome type 1 skos:exactMatch ORPHA 3453 manual github:KrishnaTO
ARI 0001157 Polyglandular autoimmune syndrome type 1 skos:exactMatch umls C0085859 manual github:KrishnaTO
ARI 0001158 Polyglandular autoimmune syndrome type 2 skos:exactMatch SNOMEDCT 83728000 manual github:KrishnaTO
ARI 0001158 Polyglandular autoimmune syndrome type 2 skos:exactMatch omop 4308266 manual github:KrishnaTO
ARI 0001158 Polyglandular autoimmune syndrome type 2 skos:exactMatch MONDO 0010012 manual github:KrishnaTO
ARI 0001158 Polyglandular autoimmune syndrome type 2 skos:exactMatch ORPHA 3143 manual github:KrishnaTO
ARI 0001159 Polyglandular autoimmune syndrome type 3 skos:exactMatch SNOMEDCT 449731009 manual github:KrishnaTO
ARI 0001159 Polyglandular autoimmune syndrome type 3 skos:exactMatch omop 42709859 manual github:KrishnaTO
ARI 0001159 Polyglandular autoimmune syndrome type 3 skos:exactMatch MONDO 0016422 manual github:KrishnaTO
ARI 0001159 Polyglandular autoimmune syndrome type 3 skos:exactMatch ORPHA 227982 manual github:KrishnaTO
ARI 0001159 Polyglandular autoimmune syndrome type 3 skos:exactMatch umls C1535942 manual github:KrishnaTO
ARI 0001160 Polyglandular autoimmune syndrome type 4 skos:exactMatch SNOMEDCT 449730005 manual github:KrishnaTO
ARI 0001160 Polyglandular autoimmune syndrome type 4 skos:exactMatch omop 42709858 manual github:KrishnaTO
ARI 0001160 Polyglandular autoimmune syndrome type 4 skos:exactMatch MONDO 0016423 manual github:KrishnaTO
ARI 0001160 Polyglandular autoimmune syndrome type 4 skos:exactMatch ORPHA 227990 manual github:KrishnaTO
ARI 0001160 Polyglandular autoimmune syndrome type 4 skos:exactMatch umls C3266026 manual github:KrishnaTO
ARI 0001144 Neuromyotonia skos:exactMatch omop 46272949 manual-negative github:KrishnaTO
ARI 0001158 Polyglandular autoimmune syndrome type 2 skos:exactMatch MONDO 0019012 manual-negative github:KrishnaTO
ARI 0001158 Polyglandular autoimmune syndrome type 2 skos:exactMatch ORPHA 65759 manual-negative github:KrishnaTO
ARI 0001213 Morvan syndrome skos:exactMatch DOID NoTermFound manual-absent github:KrishnaTO
ARI 0001213 Morvan syndrome skos:exactMatch ncit NoTermFound manual-absent github:KrishnaTO
ARI 0001213 Morvan syndrome skos:exactMatch icd10cm NoTermFound manual-absent github:KrishnaTO
ARI 0001144 Neuromyotonia skos:exactMatch icd10cm NoTermFound manual-absent github:KrishnaTO
ARI 0001144 Neuromyotonia skos:exactMatch DOID NoTermFound manual-absent github:KrishnaTO
ARI 0001157 Polyglandular autoimmune syndrome type 1 skos:exactMatch icd10cm NoTermFound manual-absent github:KrishnaTO
ARI 0001158 Polyglandular autoimmune syndrome type 2 skos:exactMatch mesh NoTermFound manual-absent github:KrishnaTO
ARI 0001159 Polyglandular autoimmune syndrome type 3 skos:exactMatch DOID NoTermFound manual-absent github:KrishnaTO
ARI 0001159 Polyglandular autoimmune syndrome type 3 skos:exactMatch ncit NoTermFound manual-absent github:KrishnaTO
ARI 0001159 Polyglandular autoimmune syndrome type 3 skos:exactMatch icd10cm NoTermFound manual-absent github:KrishnaTO
ARI 0001159 Polyglandular autoimmune syndrome type 3 skos:exactMatch mesh NoTermFound manual-absent github:KrishnaTO
ARI 0001160 Polyglandular autoimmune syndrome type 4 skos:exactMatch DOID NoTermFound manual-absent github:KrishnaTO
ARI 0001160 Polyglandular autoimmune syndrome type 4 skos:exactMatch ncit NoTermFound manual-absent github:KrishnaTO
ARI 0001160 Polyglandular autoimmune syndrome type 4 skos:exactMatch icd10cm NoTermFound manual-absent github:KrishnaTO
ARI 0001160 Polyglandular autoimmune syndrome type 4 skos:exactMatch mesh NoTermFound manual-absent github:KrishnaTO
ARI 0001158 Polyglandular autoimmune syndrome type 2 skos:exactMatch DOID 0060234 manual-negative github:KrishnaTO
ARI 0001158 Polyglandular autoimmune syndrome type 2 skos:exactMatch umls C1275078 manual-negative github:KrishnaTO
ARI 0001158 Polyglandular autoimmune syndrome type 2 skos:exactMatch mesh C563187 manual-negative github:KrishnaTO
ARI 0001158 Polyglandular autoimmune syndrome type 2 skos:exactMatch ncit C98873 manual-negative github:KrishnaTO
57 changes: 57 additions & 0 deletions mappings/ari.sssom.tsv
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Expand Up @@ -583,3 +583,60 @@ ARI:0001074 Cryptogenic organizing pneumonia skos:exactMatch Not ncit:C35806 nci
ARI:0001074 Cryptogenic organizing pneumonia skos:exactMatch Not icd10cm:J84.114 icd10cm semapv:ManualMappingCuration github:KrishnaTO 2026-09-03T00:34:22+00:00
ARI:0001074 Cryptogenic organizing pneumonia skos:exactMatch Not umls:C0085786 umls semapv:ManualMappingCuration github:KrishnaTO 2026-09-03T00:34:22+00:00
ARI:0001074 Cryptogenic organizing pneumonia skos:exactMatch Not mesh:D000080203 mesh semapv:ManualMappingCuration github:KrishnaTO 2026-09-03T00:34:22+00:00
ARI:0001131 Mooren's ulcer skos:exactMatch ORPHA:519408 ORPHA semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001131 Mooren's ulcer skos:exactMatch MONDO:0001032 MONDO semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001131 Mooren's ulcer skos:exactMatch DOID:10439 DOID semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001131 Mooren's ulcer skos:exactMatch SNOMEDCT:22440001 SNOMEDCT semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001131 Mooren's ulcer skos:exactMatch icd10cm:H16.05 icd10cm semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001131 Mooren's ulcer skos:exactMatch umls:C0155072 umls semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001131 Mooren's ulcer skos:exactMatch omop:435271 omop semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001144 Neuromyotonia skos:exactMatch SNOMEDCT:305719002 SNOMEDCT semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001144 Neuromyotonia skos:exactMatch MONDO:0019399 MONDO semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001144 Neuromyotonia skos:exactMatch ncit:C202012 ncit semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001144 Neuromyotonia skos:exactMatch mesh:D020386 mesh semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001144 Neuromyotonia skos:exactMatch umls:C0242287 umls semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001144 Neuromyotonia skos:exactMatch ORPHA:84142 ORPHA semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001144 Neuromyotonia skos:exactMatch omop:4125693 omop semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001157 Polyglandular autoimmune syndrome type 1 skos:exactMatch SNOMEDCT:11244009 SNOMEDCT semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001157 Polyglandular autoimmune syndrome type 1 skos:exactMatch omop:4008545 omop semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001157 Polyglandular autoimmune syndrome type 1 skos:exactMatch DOID:0050167 DOID semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001157 Polyglandular autoimmune syndrome type 1 skos:exactMatch MONDO:0009411 MONDO semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001157 Polyglandular autoimmune syndrome type 1 skos:exactMatch ncit:C129727 ncit semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001157 Polyglandular autoimmune syndrome type 1 skos:exactMatch ORPHA:3453 ORPHA semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001157 Polyglandular autoimmune syndrome type 1 skos:exactMatch umls:C0085859 umls semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001158 Polyglandular autoimmune syndrome type 2 skos:exactMatch SNOMEDCT:83728000 SNOMEDCT semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001158 Polyglandular autoimmune syndrome type 2 skos:exactMatch omop:4308266 omop semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001158 Polyglandular autoimmune syndrome type 2 skos:exactMatch MONDO:0010012 MONDO semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001158 Polyglandular autoimmune syndrome type 2 skos:exactMatch ORPHA:3143 ORPHA semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001159 Polyglandular autoimmune syndrome type 3 skos:exactMatch SNOMEDCT:449731009 SNOMEDCT semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001159 Polyglandular autoimmune syndrome type 3 skos:exactMatch omop:42709859 omop semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001159 Polyglandular autoimmune syndrome type 3 skos:exactMatch MONDO:0016422 MONDO semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001159 Polyglandular autoimmune syndrome type 3 skos:exactMatch ORPHA:227982 ORPHA semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001159 Polyglandular autoimmune syndrome type 3 skos:exactMatch umls:C1535942 umls semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001160 Polyglandular autoimmune syndrome type 4 skos:exactMatch SNOMEDCT:449730005 SNOMEDCT semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001160 Polyglandular autoimmune syndrome type 4 skos:exactMatch omop:42709858 omop semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001160 Polyglandular autoimmune syndrome type 4 skos:exactMatch MONDO:0016423 MONDO semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001160 Polyglandular autoimmune syndrome type 4 skos:exactMatch ORPHA:227990 ORPHA semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001160 Polyglandular autoimmune syndrome type 4 skos:exactMatch umls:C3266026 umls semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001144 Neuromyotonia skos:exactMatch Not omop:46272949 omop semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001158 Polyglandular autoimmune syndrome type 2 skos:exactMatch Not MONDO:0019012 MONDO semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001158 Polyglandular autoimmune syndrome type 2 skos:exactMatch Not ORPHA:65759 ORPHA semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001213 Morvan syndrome skos:exactMatch sssom:NoTermFound DOID semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001213 Morvan syndrome skos:exactMatch sssom:NoTermFound ncit semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001213 Morvan syndrome skos:exactMatch sssom:NoTermFound icd10cm semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001144 Neuromyotonia skos:exactMatch sssom:NoTermFound icd10cm semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001144 Neuromyotonia skos:exactMatch sssom:NoTermFound DOID semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001157 Polyglandular autoimmune syndrome type 1 skos:exactMatch sssom:NoTermFound icd10cm semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001158 Polyglandular autoimmune syndrome type 2 skos:exactMatch sssom:NoTermFound mesh semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001159 Polyglandular autoimmune syndrome type 3 skos:exactMatch sssom:NoTermFound DOID semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001159 Polyglandular autoimmune syndrome type 3 skos:exactMatch sssom:NoTermFound ncit semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001159 Polyglandular autoimmune syndrome type 3 skos:exactMatch sssom:NoTermFound icd10cm semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001159 Polyglandular autoimmune syndrome type 3 skos:exactMatch sssom:NoTermFound mesh semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001160 Polyglandular autoimmune syndrome type 4 skos:exactMatch sssom:NoTermFound DOID semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001160 Polyglandular autoimmune syndrome type 4 skos:exactMatch sssom:NoTermFound ncit semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001160 Polyglandular autoimmune syndrome type 4 skos:exactMatch sssom:NoTermFound icd10cm semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001160 Polyglandular autoimmune syndrome type 4 skos:exactMatch sssom:NoTermFound mesh semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001158 Polyglandular autoimmune syndrome type 2 skos:exactMatch Not DOID:0060234 DOID semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001158 Polyglandular autoimmune syndrome type 2 skos:exactMatch Not umls:C1275078 umls semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001158 Polyglandular autoimmune syndrome type 2 skos:exactMatch Not mesh:C563187 mesh semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
ARI:0001158 Polyglandular autoimmune syndrome type 2 skos:exactMatch Not ncit:C98873 ncit semapv:ManualMappingCuration github:KrishnaTO 2026-09-07T21:38:45+00:00
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