Genomic surveillance workflow coupling clonal lineage assignment, acquired-resistome screening, and maximum-likelihood phylogenetic reconstruction for bacterial pathogen populations.
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Aug 13, 2026 - Shell
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bactopia
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A curated list of software, pipelines, databases, and resources for bacterial and microbial pangenomics.
bioinformatics genomics bioinformatics-pipeline awesome-list microbial-genomics pangenomics pangenome bioinformatics-tool roary bactopia
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Aug 31, 2026
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