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nfcore

Here are 5 public repositories matching this topic...

STaiMIC / ampliseq-colorectal-training

16S microbiome analysis with Ampliseq - Nextflow introduction

nextflow metagenomics cancer-genomics microbiome 16s ampliseq 16s-rrna-analysis nfcore

Updated Jul 28, 2026
Nextflow

patkarlab / LSC_CEBPA_MRD

nextflow based pipeline for mrd detection of CEBPA

pipeline mrd nfcore cebpa

Updated Apr 23, 2026
Nextflow

VCU-Bioinformatics-Core / nf-core-atacseq

template repository for the execution of nf-core/scrnaseq pipeline on VCU Apollo Server.

nextflow atacseq nfcore

Updated Jan 15, 2026
Shell

patkarlab / LSC_smMIPS_MRD

nf-core based pipeline for smMIPS based assay

mrd nextflow-pipeline nfcore smmips

Updated Apr 15, 2026
Nextflow

Qasim-Hussain-Code / bactopia-bacterial-phyloresistomics-pipeline

Genomic surveillance workflow coupling clonal lineage assignment, acquired-resistome screening, and maximum-likelihood phylogenetic reconstruction for bacterial pathogen populations.

workflow nfcore bactopia phyloresistomics

Updated Aug 13, 2026
Shell

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